YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG5002-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	50	0.89
Transmembrane Helix	51	75	0.79
Non-Cytoplasmic	76	124	0.49
Transmembrane Helix	125	147	0.86
Cytoplasmic	148	150	0.61
Transmembrane Helix	151	173	0.75
Non-Cytoplasmic	174	199	0.85
Transmembrane Helix	200	219	0.93
Cytoplasmic	220	234	0.82
Transmembrane Helix	235	254	0.93
Non-Cytoplasmic	255	294	0.91
Transmembrane Helix	295	316	0.83
Cytoplasmic	317	331	0.79
Transmembrane Helix	332	354	0.75
Non-Cytoplasmic	355	374	0.52
Transmembrane Helix	375	409	0.74
Cytoplasmic	410	424	0.54
Transmembrane Helix	425	455	0.72
Non-Cytoplasmic	456	595	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRADEDNLYR EQLPNVSTLI RDGGRKLCRP STVTNKFPIL KWLPRYRLEY IMQDFIAGFT  60
   61 VGLTTIPQAI AYGVVAGLEP QYGLYSAFMG CFTYIVFGSC KDVTIATTAI MALMVNQYAT 120
  121 ISPDYAVLVC FLAGCIVLLL GLLNMGVLVR FISIPVITGF TMAAATTIGS AQINNIVGLT 180
  181 SPSNDLLPAW KNFFTHLTSI RLWDALLGVS SLVFLLLMTR VKDIKWGNRI FWKYLGLSRN 240
  241 ALAVIFGTFL AYILSRDGNQ PFRVTGNITA GVPPFRLPPF STTVDGEYVS FGEMISTVGA 300
  301 SLGSIPLISI LEIVAISKAF SKGKIVDASQ EMVALGMCNI MGSFVLSMPV TGSFTRTAVN 360
  361 NASGVKTPLG GAVTGALVLM ALAFLTQTFY FIPKCTLAAI IIAAMISLVE LHKIKDMWKS 420
  421 KKKDLFPFVV TVLTCMFWSL EYGILCGIGA NMVYILYSSA RPHVDIKLEK INGHEVSVVD 480
  481 VKQKLDYASA EYLKEKVVRF LNNQNGETQL VVIKGEEINS IDYTVAMNIV SMKGDLEALN 540
  541 CAMICWNWNI ASAGVVCRLN NDLRPIFKFD LSLEEVVAGH FDSPSNTAST VTIEA