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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7302983, gi|2...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWSRRRRRN NNNNNNSSSN NNNAASESRS NDNCNYSTTN DFNKINKLLL ITYMLLITAA  60
   61 TICQSAAQSP SSSNGNGVGG SGSTGGSPLS ALLKSGGASY NQQLPQQQLF AMLTRNGGGS 120
  121 SGPRSSGGNR GYTSARQHFM ALSEDYSDAD VDEEDMAALH YPLSASHPPA GVQGSSSSSG 180
  181 ISIQSGSLET NGFVADDGGQ YEHAQKALEA AAAAAKASNK YNIDCPKDCK CLNVLFDCDK 240
  241 LHLERVPVLP SYVQTLHLAN NKLNDTTVLE IRNLLNLTKV SLKRNLLEVI PKFIGLSGLK 300
  301 HLVLANNHIT SISSESLAAL PLLRTLDLSR NKLHTIELNS FPKSNNLVHL ILSFNEITNV 360
  361 NEHSFATLNN LTDLELSNNR LSTLPIRVFK NLNQLKKLAL NFNQLEINWS TFRGLESMKN 420
  421 LQLKSNKIRA LQDGVFYVMH KIETIDLAMN QISSLSRQGL FNLTKLRHLN LSFNAISRIE 480
  481 VDTWEFTQSL EVLDLSNNAI NEFKPQHLDC LHRLKTLNLA HNRLQYLQEN TFDCVKNLEE 540
  541 LNLRRNRLSW IIEDQSAAAP FKGLRKLRRL DLHGNNLKQI STKAMSGLNN LEILNLGSNA 600
  601 LASIQVNAFE HMLRLNKLVF KSLNFICDCD LVWFQQWLKN RFPQQAEHAV CGYPEHLLDR 660
  661 HLKSLSSSEL VCVDSPKPRV EQEPDDMLAV NAANITLECI ASSPTAASLA AADELKIKWR 720
  721 HDNQHVQERP AVHDGASTET QIRHDLSTNQ TSIYGYLRLT NVTYESAGRY QCVVSNAFGT 780
  781 TYAQKFKISI GIHPTFLQVP SNLTLDAGEM ARLVCSASGD PTPEIALQKF GGSEFPAATE 840
  841 RRLQVIREEN AFLITNAKPS DSGIYTCTAL SAAGEIKVNA TLVVNDKPQP SIPLVHQEVV 900
  901 VGRTCVLQCL SETANADFEL EHPHREWFKE NKPIHISPTA PDGDQLVVVK ENLNWVVLLV 960
  961 GIITVTVICV VVDCCIIWCT LRYQKKKLRM SLAAERHSTQ LRPRSLADLG CSYDEANHRR1020
 1021 LTVMSTPPSE QRCLEQGLTL SYLRQTDLEA QQDHLSSKDS GTGSDAAVKR TLDDFEVAMP1080
 1081 SHKHHTDDEE EEEVEEVYEE NEPPYIKHTY EVNYAEPEQH LFLQNNNHNY DGGGIGVAGG1140
 1141 VNKMVPNALL RKCSAGASGS NYSSIQQCTT VDI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle