YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Asph-PB
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGDVQPRKR KDKRRKRDDD ESSHGVHITK MGNEDLHLHV HHDHGTGGHW CAKIIFFALM  60
   61 AVLLGLVGLI IMENRGLEDL DTPLSESRFS KVFDGWVDEH RDEHDGHDVQ EPSGEALDDH 120
  121 DEHDDHDDHE DEDEEPLTEE LEEELEEEEE PTEEDEPAAD EEYEEDEDEE NNAGENITAE 180
  181 DAEEEEEEED NDDEGTVEAT VEATTEATTE ATGEYEAEED DEDEAAADDD AVESTEAPLS 240
  241 KAEEQEDDED EDEEEQEIEE SVEPERSQYA AQSAPAKDNN DDDDDDDQDK NDADDGDDDE 300
  301 FESLAQQFEN DPEDTVPAKA VESEEQDQDQ ADEEEPKEEG SSWLASQIKP KEAAPAPAEK 360
  361 EDPFEQELRK ANEEMIRELN NH

Type	Start	End	Confidence
Cytoplasmic	1	49	0.84
Transmembrane Helix	50	72	0.87
Non-Cytoplasmic	73	382	0.87