YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	beta4GalNAcTA-PA
Protein type:	Globular with Signal Peptide
Type Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLFTKANLI RFLAGAICLL LVLNFVGFRS DGGSATSLSK LSIRRVHKYA HIYGNASSDG  60
   61 AGGSEASRLP ASPLALSKDR ERDQELNGGP NSTIRTVIAT ANFTSIPQDL TRFLLGTKKF 120
  121 LPPRQKSTSA LLANCTDPDP RDGGPITPNT TLESLDVIEA ELGPLLRPGG AFEPENCNAQ 180
  181 HHVAIVVPFR DRYAHLLLFL RNIHPFLMKQ RIAYRIFIVE QTNGKPFNRA AMMNIGYLEA 240
  241 LKLYQWDCFI FHDVDLLPLD DRNLYNCPRQ PRHMSVAIDT LNFRLPYRSI FGGVSAMTRE 300
  301 HFQAVNGFSN SFFGWGGEDD DMSNRLKHAN LFISRYPVNI ARYKMLKHQK EKANPKRYEN 360
  361 LQNGMSKIEQ DGINSIKYSI YSIKQFPTFT WYLAELKNSE RKS

Type	Start	End	Confidence
Signal Peptide	1	30	0.68
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	403	0.99