YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG18324-PB
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.14
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSDFVLGG TAAMGAVVFT NPIDVVKTRM QLQGELAARG TYVKPYRHLP QAMLQIVLND  60
   61 GLLALEKGLA PALCYQFVLN SVRLSVYSNA LELGYLQNAD GSISFYRGMF FGALGGCTGT 120
  121 YFASPFYMIK AQQHAQAVQS IAVGFQHKHT SMMDALLHIY RTNGISGFWR AALPSLNRTL 180
  181 VASSVQIGTF PKAKSLLKDK GWITHPVLLS FCAGLSSGTL VAVANSPFDV LTTRMYNQPV 240
  241 DEKGRGLMYK GLVDCFTKIW RTEGIHGMYK GFWPIYFRSA PHTTLTFVFF EKLLHLRDRY 300
  301 VFSQRRN

Type	Start	End	Confidence
Cytoplasmic	1	72	0.60
Transmembrane Helix	73	87	0.14
Non-Cytoplasmic	88	102	0.48
Transmembrane Helix	103	127	0.68
Cytoplasmic	128	201	0.64
Transmembrane Helix	202	224	0.84
Non-Cytoplasmic	225	274	0.92
Transmembrane Helix	275	296	0.63
Cytoplasmic	297	307	0.75