YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220942788
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.62
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPFMEKTLL LLGVLCCIQV TTALMCYDCN SEFDPRCGDP FEPYSIGEVN CSKQEPLEHL  60
   61 KDKYKPTLCR KTVQKIYGKT RIVRGCGYIP DENTDNKCVR RSGTHDVAAI YCSCTKDLCN 120
  121 GANSPAGQWM MLPLIVAAGL ALLLNSRHTI RFQSS

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	128	0.98
Transmembrane Helix	129	146	0.60
Cytoplasmic	147	155	0.54