YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4663-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDNNNLRSA VISDAPLLPP SSSIGVGVSS GGGYPPEAVL RTPYGNVRAL PGPAQPPPLP  60
   61 QSPFQQTQQY GGFGSGYGGN NYGLGGYGGF NSGAFGYGGL GGFGSGLGSG FGSGYGYGGG 120
  121 YGGGYGGGFG GGYNRFGAMG ENDAEQRFIY MAESSSRPAF QSIESLVSAI GNIASMLDST 180
  181 FFALTSSFRA ILGVATNFVR LRSVFAQFWT TFAIFRGLNW MYRKILYWLR LSNLDPSSAA 240
  241 FKKAFAEALN ENNGQARGAP NVPRKGNSPW PVLAFISFIF TAPYLIMKLL GTVTNTAQEE 300
  301 ARNPAKWTAP IQTQAVYEFV ARSPSELSLR AGQMLHVAPR DIQQTLNLLN TGWALATTNG 360
  361 QTSGIIPISY VKSPQQMRQE MQDQTKPAQP QPELMNLSAG AFASPPLEQQ MNYDFNLAAQ 420
  421 QQAPLGPPST TSAVLGEGFA

Type	Start	End	Confidence
Cytoplasmic	1	92	0.80
Transmembrane Helix	93	119	0.67
Non-Cytoplasmic	120	162	0.50
Transmembrane Helix	163	177	0.60
Cytoplasmic	178	178	0.07
Transmembrane Helix	179	193	0.56
Non-Cytoplasmic	194	197	0.41
Transmembrane Helix	198	220	0.70
Cytoplasmic	221	268	0.55
Transmembrane Helix	269	291	0.75
Non-Cytoplasmic	292	440	0.50