YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AQP-PA
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTALGISA LFMVGCCALA QIARVISRRL VTREGLVPIL INEAIAAAEL CACCFELIIV  60
   61 ADNFGVSMYA VCLFLLTIWW GRVWGDASAC PYTHMEDVVE GRTSFKEMAL RSWAELMGGC 120
  121 CVYRVVQVFW WLELAETHRG RAFEACNADM QVSPYLGAVI EGVATLLCRL ASKTISEKEP 180
  181 RFGSYIDSFI GTSLVVAVYA FNYVLLAAFN FSGGYFNPVL ATALKWGCRG HTHLEHIIVY 240
  241 WIGACAGAVL SIPVFKVPAV RRLLLGEGAA SKSKQE

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.72
Transmembrane Helix	6	26	0.76
Cytoplasmic	27	38	0.67
Transmembrane Helix	39	59	0.75
Non-Cytoplasmic	60	65	0.70
Transmembrane Helix	66	84	0.86
Cytoplasmic	85	111	0.83
Transmembrane Helix	112	131	0.61
Non-Cytoplasmic	132	151	0.63
Transmembrane Helix	152	171	0.62
Cytoplasmic	172	187	0.81
Transmembrane Helix	188	209	0.87
Non-Cytoplasmic	210	236	0.84
Transmembrane Helix	237	257	0.93
Cytoplasmic	258	276	0.86