YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Nmda1-PD, Nmda1-...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWQSVPQYP QYQDPNQQYN YGGGNPPQGG YGGYPPQGGY PPQGPPQGYP PYAQGGAQPY  60
   61 PQPYGQGPPP GGYAPQPGFI QPPPSAGGYG AYDDPESQPK NFSFDDQSIR RGFIRKVYLI 120
  121 LMGQLIVTFG AVALFVYHEG TKTFARNNMW LFWVALGVML VTMLSMACCE SVRRQTPTNF 180
  181 IFLGLFTAAQ SFLMGVSATK YAPKEVLMAV GITAAVCLAL TIFALQTKYD FTMMGGILIA 240
  241 CMVVFLIFGI VAIFVKGKII TLVYASIGAL LFSVYLIYDT QLMMGGEHKY SISPEEYIFA 300
  301 ALNLYLDIIN IFMYILTIIG ASRD

Type	Start	End	Confidence
Cytoplasmic	1	116	0.94
Transmembrane Helix	117	138	0.93
Non-Cytoplasmic	139	148	0.87
Transmembrane Helix	149	169	0.94
Cytoplasmic	170	178	0.79
Transmembrane Helix	179	199	0.86
Non-Cytoplasmic	200	205	0.75
Transmembrane Helix	206	225	0.94
Cytoplasmic	226	232	0.71
Transmembrane Helix	233	254	0.93
Non-Cytoplasmic	255	259	0.70
Transmembrane Helix	260	278	0.95
Cytoplasmic	279	298	0.74
Transmembrane Helix	299	321	0.86
Non-Cytoplasmic	322	324	0.74