YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG3814-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYHYQQGDET GAYTDAEADK SFAFDDQSIR KGFIRKVYLI LMCQLLITFG FVSVFTFSKA  60
   61 SQEWVQKNPA LFWIALAVLI VTMICMACCE SVRRKTPLNF IFLFLFTVAE SFLLGMVAGQ 120
  121 FEADEVLMAV GITAAVALGL TLFALQTKYD FTMCGGVLVA CLVVFIIFGI IAIFIPGKVI 180
  181 GLVYASLGAL LFSVYLVYDT QLMLGGNHKY SISPEEYIFA ALNLYLDIIN IFMYILTIIG 240
  241 LSRN

Type	Start	End	Confidence
Cytoplasmic	1	36	0.99
Transmembrane Helix	37	58	0.93
Non-Cytoplasmic	59	69	0.88
Transmembrane Helix	70	89	0.96
Cytoplasmic	90	97	0.85
Transmembrane Helix	98	119	0.92
Non-Cytoplasmic	120	125	0.87
Transmembrane Helix	126	145	0.95
Cytoplasmic	146	153	0.78
Transmembrane Helix	154	175	0.93
Non-Cytoplasmic	176	179	0.85
Transmembrane Helix	180	198	0.90
Cytoplasmic	199	218	0.80
Transmembrane Helix	219	241	0.88
Non-Cytoplasmic	242	244	0.85