YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG3790-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.80
Transmembrane Helix	16	37	0.76
Non-Cytoplasmic	38	151	0.97
Transmembrane Helix	152	174	0.92
Cytoplasmic	175	184	0.83
Transmembrane Helix	185	203	0.96
Non-Cytoplasmic	204	210	0.69
Transmembrane Helix	211	231	0.93
Cytoplasmic	232	239	0.86
Transmembrane Helix	240	263	0.91
Non-Cytoplasmic	264	269	0.86
Transmembrane Helix	270	292	0.84
Cytoplasmic	293	362	0.97
Transmembrane Helix	363	383	0.95
Non-Cytoplasmic	384	390	0.82
Transmembrane Helix	391	409	0.91
Cytoplasmic	410	418	0.71
Transmembrane Helix	419	438	0.95
Non-Cytoplasmic	439	442	0.74
Transmembrane Helix	443	464	0.81
Cytoplasmic	465	470	0.72
Transmembrane Helix	471	494	0.86
Non-Cytoplasmic	495	501	0.71
Transmembrane Helix	502	523	0.95
Cytoplasmic	524	604	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFDEVLREV GSFGLYQKVI ICSVLLPAAL PCAFHAYSQL FIAATPQHFC RVPELEPWTQ  60
   61 DYVQLVKNLS IPRNRNGAYA ECSMYSRNYT DIVRYLEYRP PPDLLRQQAE DLLKLQPDTT 120
  121 QVVPCQHGWH YDKSIYSSTV VQEWNLVCDR SFLVTLALVV FGVGGLLGNY VFGYLVDLWG 180
  181 RRPSFYAYLL LEIIACAASA FAWNYYTWLG LRFVVGLTVP AILASPYVLA IELVGPERRV 240
  241 FCTIVSNIAY SLGLVVLAGV IYIVRDWREL SLAVSMPLLM LFSCFFVLPE SPRWLMAVGK 300
  301 TRRAIKILKV MARVNGVRVN RDFVERLQRK LVITRAAETK SSMTTHYGIL DLFRGPNMRR 360
  361 KTLIITLIWF ANTSVYVGLS YYAPALGGDE IWNFFLAGAV ELPTYLLLWP GLSYFGRRWI 420
  421 LFISMLVGGV ACVATFLYPD ITLLLYCVGK MGISSSFVVL PLMASELYPT VVRGLGMSFS 480
  481 SVISMVGPIV IPMINHMGQQ MLVLPLIVMG ALLILGGFAS LLLPETRNRN LPQTLEEGEA 540
  541 VPLSFLLCCC VESERKPNNI RASPKKRILP EAGTPVFHRV DTPVSDRVPC KIVCSICKNE 600
  601 MRTL