YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or49b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEDIQLIYM NIKILRFWAL LYDKNLRRYV CIGLASFHIF TQIVYMMSTN EGLTGIIRNS  60
   61 YMLVLWINTV LRAYLLLADH DRYLALIQKL TEAYYDLLNL NDSYISEILD QVNKVGKLMA 120
  121 RGNLFFGMLT SMGFGLYPLS SSERVLPFGS KIPGLNEYES PYYEMWYIFQ MLITPMGCCM 180
  181 YIPYTSLIVG LIMFGIVRCK ALQHRLRQVA LKHPYGDRDP RELREEIIAC IRYQQSIIEY 240
  241 MDHINELTTM MFLFELMAFS ALLCALLFML IIVSGTSQLI IVCMYINMIL AQILALYWYA 300
  301 NELREQNLAV ATAAYETEWF TFDVPLRKNI LFMMMRAQRP AAILLGNIRP ITLELFQNLL 360
  361 NTTYTFFTVL KRVYG

Type	Start	End	Confidence
Cytoplasmic	1	25	0.96
Transmembrane Helix	26	46	0.86
Non-Cytoplasmic	47	55	0.75
Transmembrane Helix	56	76	0.84
Cytoplasmic	77	121	0.95
Transmembrane Helix	122	140	0.93
Non-Cytoplasmic	141	171	0.93
Transmembrane Helix	172	197	0.89
Cytoplasmic	198	250	0.97
Transmembrane Helix	251	272	0.94
Non-Cytoplasmic	273	278	0.76
Transmembrane Helix	279	300	0.92
Cytoplasmic	301	375	0.88