YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or49a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLRSYEDF IFMANMMFKT LGYDLFHTPK PWWRYLLVRG YFVLCTISNF YEASMVTTRI  60
   61 IEWESLAGSP SKIMRQGLHF FYMLSSQLKF ITFMINRKRL LQLSHRLKEL YPHKEQNQRK 120
  121 YEVNKYYLSC STRNVLYVYY FVMVVMALEP LVQSCIMYLI GFGKADFTYK RIFPTRLTFD 180
  181 SEKPLGYVLA YVIDFTYSQF IVNVSLGTDL WMMCVSSQIS MHLGYLANML ASIRPSPETE 240
  241 QQDCDFLASI IKRHQLMIRL QKDVNYVFGL LLASNLFTTS CLLCCMAYYT VVEGFNWEGI 300
  301 SYMMLFASVA AQFYVVSSHG QMLIDLSTNL AKAAFESKWY EGSLRYKKEI LILMAQAQRP 360
  361 LEISARGVII ISLDTFKILM TITYRFFAVI RQTVEK

Type	Start	End	Confidence
Cytoplasmic	1	34	0.78
Transmembrane Helix	35	55	0.68
Non-Cytoplasmic	56	77	0.64
Transmembrane Helix	78	96	0.69
Cytoplasmic	97	135	0.83
Transmembrane Helix	136	160	0.78
Non-Cytoplasmic	161	204	0.67
Transmembrane Helix	205	226	0.60
Cytoplasmic	227	265	0.93
Transmembrane Helix	266	290	0.93
Non-Cytoplasmic	291	298	0.80
Transmembrane Helix	299	317	0.89
Cytoplasmic	318	396	0.81