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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Prp8-PA
Protein type: Globular with Signal Peptide
Type Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIPPYMIPQ NAWAAQLMAQ QAYAAAHAQQ AQLHAQQQMA NQIQQIPPPG APLPPAGGHT  60
   61 NGIPIPVGGQ GPGLGQIPTP KPDILTEEKL QEKALKWQHL QSKRFAEKRK FGFVDTQKED 120
  121 MPPEHIRKII RDHGDMTSRK YRHDKRVYLG ALKYMPHAVL KLLENMPMPW EQIRDVQVLY 180
  181 HITGAITFVN EIPWVIEPVY IAQWGTMWIM MRREKRDRRH FKRMRFPPFD DEEPPLDYAD 240
  241 NVLDVEPLEA IQIELDNDED NAVYKWFYDH RPLVDTQFVN GTTYRKWNLS LPQLATLYRL 300
  301 ANQLLTDLVD NNFFYLFDPK SFFTAKALNM AIPGGPKFEP LIKDHNVGDE DWNEFNDINK 360
  361 VIIRQPIRTE YRIAFPYLYN NMPHFVHLSW YHTPNVVYIK TEDPDLPAFY FDPLINPISH 420
  421 RNANSKIQEP LPDDDEDFTL PDDVQPFLQD TPLYTDNTAN GIALLWAPRP FNMRSGRSRR 480
  481 AIDVPLVKCW YKEHCPPGHP VKVRVSYQKL LKYYVLNALK HRKPKPQKKR YLFRSFKATK 540
  541 FFQTTTLDWV EAGLQVCRQG YNMLNLLIHR KNLNYLHLDY NFNLKPVKTL TTKERKKSRF 600
  601 GNAFHLCREI LRLTKLIIDS HVQYRLNNVD AFQLADGLQY IFAHVGQLTG MYRYKYKLMR 660
  661 QIRMCKDLKH LIYYRFNTGP VGKGPGCGFW APGWRVWLFF MRGITPLLER WLGNLLSRQF 720
  721 EGRHSKGVAK TVTKQRVESH FDLELRASVM HDIVDMMPEG IKQNKARTIL QHLSEAWRCW 780
  781 KANIPWKVPG LPIPIENMIL RYVKMKADWW TNTAHYNRER IRRGATVDKT VCKKNLGRLT 840
  841 RLYLKAEQER QHNYLKDGPY ISPEEAVAIY TTTVHWLESR RFAPIPFPPL SYKHDTKLLI 900
  901 LALERLKEAY SVKSRLNQSQ REELGLIEQA YDNPHEALSR IKRHLLTQRA FKEVGIEFMD 960
  961 LYSHLIPVYE VEPLEKITDA YLDQYLWYEA DKRRLFPPWI KPSDTEPPPL LAYKWCQGIN1020
 1021 NLQDVWDVGE GECNVLLESR FEKLYEKIDL TLLNRLLRLI VDHNIADYMT AKNNVVINYK1080
 1081 DMNHTNSYGI IRGLQFSSFI TQYYGLVLDL LVLGLHRSSE MAGPPQMPND FLTFQDTVTE1140
 1141 TAHPIRLYCR YVDRIHLFFR FSAEEARDLI QRYLTEHPDP NNENIVGYNN KKCWPRDARM1200
 1201 RLMKHDVNLG RAVFWDIKNR LPRSVTTIGW ESTFVSVYSK DNPNLLFNMS GFECRILPKC1260
 1261 RTQNEEFTHR DGVWNLQNEI TKERTAQCFL RVDDESLGRF HNRVRQILMA SGSTTFTKIV1320
 1321 NKWNTALIGL MTYFREAVVN TQELLDLLVK CENKIQTRIK IGLNSKMPSR FPPVVFYTPK1380
 1381 ELGGLGMLSM GHVLIPQSDL RWSKQTDVGI THFRSGMSHD EDQLIPNLYR YIQPWESEFI1440
 1441 DSQRVWAEYA LKRQEANAQN RRLTLEDLED SWDRGIPRIN TLFQKDRHTL AYDKGWRIRT1500
 1501 EFKQYQVLKQ NPFWWTHQRH DGKLWNLNNY RTDMIQALGG VEGILEHTLF KGTYFPTWEG1560
 1561 LFWEKASGFE ESMKYKKLTN AQRSGLNQIP NRRFTLWWSP TINRANVYVG FQVQLDLTGI1620
 1621 FMHGKIPTLK ISLIQIFRAH LWQKIHESIV MDLCQVFDQE LDALEIETVQ KETIHPRKSY1680
 1681 KMNSSCADIL LFPAYKWNVS RPSLLADTKD TMDNTTTQKY WLDIQLRWGD YDSHDVERYA1740
 1741 RAKFLDYTTD NMSIYPSPTG VLIAIDLAYN LHSAYGNWFP GCKTLIQQAM AKIMKANPAL1800
 1801 YVLRERIRKA LQLYSSEPTE PYLSSQNYGE LFSNQIIWFV DDTNVYRVTI HKTFEGNLTT1860
 1861 KPINGAIFIF NPRTGQLFLK IIHTSVWAGQ KRLGQLAKWK TAEEVAALIR SLPVEEQPKQ1920
 1921 IIVTRKGMLD PLEVHLLDFP NIVIKGSELQ LPFQACLKVE KFGDLILKAT EPQMVLFNLY1980
 1981 DDWLKTISSY TAFSRLILIL RALHVNTERT KIILKPDKTT ITEAHHIWPT LTDEEWIKVE2040
 2041 VQLKDLILAD YGKKNNVNVA SLTQSEIRDI ILGMEISAPS AQRQQIAEIE KQTKEQNQLT2100
 2101 ATTTRTTNKH GDEIITSTTS NYETQTFSSK TEWRVRAISA TNLHLRTNHI YVSSDDIKET2160
 2161 GYTYILPKNI LKKFVTISDL RAQIAGYLYG VSPPDNPQVK EIRCIVMPPQ WGTHQTINLP2220
 2221 NTLPTHQYLK DMEPLGWIHT QPNELPQLSP QDITTHAKIM QENSNWDGEK TIVITCSFTP2280
 2281 GSCSLTAYKL TPSGFEWGSK NTDKGNNPKG YLPSHYERVQ MLLSNKFLGF FMVPAQSSWN2340
 2341 YNFMGVRHDP NMKYELQLAN PKEFYHELHR TSHFLLFSNL EDGGDGAGAD REDVYA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle