YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8888-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVFDNNMRR ASRRASLRRG SISALPQKSH EIPWDIFERL FMPFLFCQAA AIVTSHLLHA  60
   61 LDISSISTFA VFVWFALATV GAVLFYHFVK VSASGKGVLI TGCEAPLAWY LAKKLDDLGF 120
  121 TVYAGFNTPI EESDEAKILK EVTSGRMKLL HLDVTSEKTI LEAARYVSQH LPHGAEGLWS 180
  181 VVHCAHWIAL GELEWIPFAV LRKSLDLNLL GSARLTQIFL PLVRRAHGRV VFLTSGLNRV 240
  241 PSPVRGIQCA TQAAVDCFAA CLRQEMRTRG VDVSVVAAGE FAPGNGWLNE TELRDQAKQM 300
  301 WNQLSSEQKK TYGEDYYEAA MTSVEKYSRQ AADIQPTLRV LIDAVTRTFP MARYTPVTSS 360
  361 ERLQIFLAEH LAPSLYESLY GEQKKFVY

Type	Start	End	Confidence
Cytoplasmic	1	39	0.88
Transmembrane Helix	40	60	0.91
Non-Cytoplasmic	61	67	0.70
Transmembrane Helix	68	89	0.92
Cytoplasmic	90	388	0.76