YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	rho-7-PA, FBpp03...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMSRALCRS WLPQVARRCH ANVNVPILRI NSGHPAARSC RQIHSNRKQS SNLKPTTGEP  60
   61 AAAEQNTPVP VNNVIKAVAF TGAFTVGCFA GATILEYENT RSLILEKARQ ARFGWWQSRS 120
  121 LADRDYWTQI KQDIRRHWDS LTPGDKMFAP ILLCNLVAFA MWRVPALKST MITYFTSNPA 180
  181 AKVVCWPMFL STFSHYSAMH LFANMYVMHS FANAAAVSLG KEQFLAVYLS AGVFSSLMSV 240
  241 LYKAATSQAG MSLGASGAIM TLLAYVCTQY PDTQLSILFL PALTFSAGAG IKVLMGIDFA 300
  301 GVVMGWKFFD HAAHLGGAMF GIFWATYGAQ IWAKRIGLLN YYHDLRRTKQ K

Type	Start	End	Confidence
Cytoplasmic	1	146	0.65
Transmembrane Helix	147	166	0.87
Non-Cytoplasmic	167	182	0.54
Transmembrane Helix	183	217	0.59
Cytoplasmic	218	223	0.59
Transmembrane Helix	224	242	0.81
Non-Cytoplasmic	243	248	0.52
Transmembrane Helix	249	268	0.89
Cytoplasmic	269	276	0.68
Transmembrane Helix	277	296	0.90
Non-Cytoplasmic	297	310	0.68
Transmembrane Helix	311	333	0.87
Cytoplasmic	334	351	0.84