YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG13189-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPGYGPVTQ ALLGTLLTWG LTAAGAALVI FVRGNQRRSL DAALGFAAGV MIAASFWSLL  60
   61 KPAIEMAESS HLYGVYAFLP VAGGFLLGSI FVYGCDKLMS YLGLNSTNMM IQMTQSKAKA 120
  121 DIAIEDSKRN GVAPDRLASK SLDSFSDCLS VQHSGESRRR KKGASINEME QCTYTTPEEQ 180
  181 QRAEDALSQW KRIMLLVVAI TVHNIPEGLA VGVSFGAIGS TNSSTFESAR NLAIGIGIQN 240
  241 FPEGLAVSLP LHAAGFSVKR ALWYGQLSGM VEPIFGVLGA VAVTFANLIL PYALSFAAGA 300
  301 MIYIVSDDIL PEAHASGNGT IATWGTVSGF LIMMCLEVAL S

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.89
Transmembrane Helix	11	32	0.93
Cytoplasmic	33	41	0.81
Transmembrane Helix	42	60	0.96
Non-Cytoplasmic	61	71	0.84
Transmembrane Helix	72	95	0.88
Cytoplasmic	96	194	0.98
Transmembrane Helix	195	218	0.78
Non-Cytoplasmic	219	240	0.72
Transmembrane Helix	241	256	0.73
Cytoplasmic	257	273	0.61
Transmembrane Helix	274	296	0.87
Non-Cytoplasmic	297	319	0.67
Transmembrane Helix	320	340	0.89
Cytoplasmic	341	341	0.84