YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Sln-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	228	0.95
Transmembrane Helix	229	248	0.89
Non-Cytoplasmic	249	268	0.84
Transmembrane Helix	269	289	0.91
Cytoplasmic	290	299	0.71
Transmembrane Helix	300	319	0.95
Non-Cytoplasmic	320	325	0.73
Transmembrane Helix	326	348	0.92
Cytoplasmic	349	356	0.86
Transmembrane Helix	357	378	0.93
Non-Cytoplasmic	379	385	0.81
Transmembrane Helix	386	408	0.88
Cytoplasmic	409	657	0.99
Transmembrane Helix	658	678	0.93
Non-Cytoplasmic	679	692	0.89
Transmembrane Helix	693	715	0.89
Cytoplasmic	716	724	0.90
Transmembrane Helix	725	746	0.90
Non-Cytoplasmic	747	752	0.72
Transmembrane Helix	753	775	0.89
Cytoplasmic	776	783	0.89
Transmembrane Helix	784	805	0.88
Non-Cytoplasmic	806	813	0.83
Transmembrane Helix	814	836	0.92
Cytoplasmic	837	855	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLQRDWHL QGSRGSVYCA SEPDPTGGVQ YESGGCLLHT KTAEGSGGGA GVDGSGGGVG  60
   61 LECGSLFSVV SAPPAPLPDI VVPTEMDGKH MESAAFRSGC CSPNASPMRR PATLSLDTQC 120
  121 CPRTLHASLL EHQISELEED DNENLLTVSS ITARPLIAKS HELRSSRKSG SGSGSGLNTA 180
  181 RSRCVRRAKE RERDRVTVAR RSKQVVKDRD SSTTTTESGG PNVEPPDGGY GWFIVFGAFS 240
  241 VQFWVAGLVK SYGVLYVEIM ETFPSSTATV ASWIPAILSA LCLVLAPLSS ALCQRFSCRT 300
  301 VVFVGGIFCA MGMILSYFAT SLLHLLLTFG VLTGIGGGLS TTPGIVIVSQ YFDKHRALAN 360
  361 GICVSGTAAG SFILPVLIKH LAENCGFHGT ILILGGCMLH VCVSATLYRP ISAYTDQDSG 420
  421 QGQEETAKPL NEDINPSTTG ILTTSTYLDT CDVGAGHELS DKFIEHLFLE ESKNHLNYYA 480
  481 SKQPAQDKSA QESDDEVKDI IGETTFIKPM KKVRSSGLLH SVEDLSTDST WVYRKHSGTD 540
  541 SNRGSRRRRN VFANDEVISK IQAHLEKPLS PPSVVSRGLS KSMEIPTPVS NLSDLKQQPV 600
  601 EQAELGILDS QLVESIIDGD GHLAADEDDD DDEERGPRTC CERIEMYLDI SLLQDPSFIL 660
  661 MCLSVTLMSV GCPYMLYYLP AHVISIGYNK SEAGYLVAIS AVLDLIGRLG LGWLCDLQLF 720
  721 DRKKTYTLCI LGAGCAVLTI PFAKTLVLVG LSAAVYGLCL GSWYVLMPVL LADVFGTDRI 780
  781 SSSYGLVRMF QSIGAISVPP LAGLMRDLSG DYEICFYCMG SCMVLGTTPL IVWSILEARN 840
  841 HRLFVQREEE ECEEA