YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Tango3-PB
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.58
Topology Confidence:	0.26
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLRIILII IFLRIVSSIP DTIISHLSAE LQIKIQIYFG LGNDLYDFSR LDGNYQKIII  60
   61 SHNISEEFKT YHDEPVLIII RLERDLNLNL ATLDVLRSYL TDRQYNDILL IDNDEENLNS 120
  121 YVDIRKAYWN AGFSQVLIYN SQQRTWSIKP YPYLQIRPTS LKEYIENRNT RNLMGYPLRV 180
  181 LVTNDPPHCF VDKDELPGSP NRYKGSIVTM LKIFADQLNA TFQANPFREF RRYSTADCVQ 240
  241 MVSDDEIDAC GSIFIRTYTY ATSQPVRLNR VVIMAPFGNP IEKFYYFFRP FDLYVWIGTG 300
  301 IIVVYIAVMG SLLHRWHFKE WNVGQYLLLA VQTLLNRELS LPQSSSGSKF MLLLLLFAIG 360
  361 FILSNLYVAL LSMMLTTKLY QRPIENLADL KAANVNILLQ THNIRPNSVY GSSEELRERF 420
  421 LLVEESQHLE KRNGLDPSYA YVDSEDRMDF YLYQQKFLRR RRMKKLSNPV GYTWAVQVIK 480
  481 QNWVLEKHYN DHVQRFFETG LQNKLVDDVH ELAVKAGFLH FFPTQTQTIE PLRLEDIVMA 540
  541 AMVLGGGHAL AVICFLVELF A

Type	Start	End	Confidence
Signal Peptide	1	18	0.57
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	292	0.71
Transmembrane Helix	293	314	0.90
Cytoplasmic	315	321	0.56
Transmembrane Helix	322	336	0.26
Non-Cytoplasmic	337	349	0.49
Transmembrane Helix	350	374	0.87
Cytoplasmic	375	536	0.58
Transmembrane Helix	537	559	0.83
Non-Cytoplasmic	560	561	0.52