YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220955652, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKFEYSLGL NELKSKELRL WQALIGEFLG NLILNFFACG ACTQIEDGTF KALAFGLAIF  60
   61 MAITIVGHLS GGHVNPAVTA GMLVAGRISL IRAFFYVVFQ CLGAIAGTAA VKILIDQDYY 120
  121 NGLGHTSLAP NITELQGLGI EFFLGLLLVL VVFGACDPHK PDSRYTAPLA IGMAVTLGHL 180
  181 GTIRYTGASM NPARTVGTAF ATDIWASHWV YWVGPVLGGV AAALLYTQVL EAKPVPKVNE 240
  241 ASEKYRTHAD EREVRVRLIS AWSEESFY

Type	Start	End	Confidence
Cytoplasmic	1	19	0.98
Transmembrane Helix	20	42	0.90
Non-Cytoplasmic	43	51	0.77
Transmembrane Helix	52	72	0.93
Cytoplasmic	73	92	0.83
Transmembrane Helix	93	115	0.92
Non-Cytoplasmic	116	134	0.95
Transmembrane Helix	135	156	0.91
Cytoplasmic	157	164	0.90
Transmembrane Helix	165	183	0.94
Non-Cytoplasmic	184	207	0.85
Transmembrane Helix	208	227	0.95
Cytoplasmic	228	268	0.96