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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: sha-PA
Protein type: Globular with Signal Peptide
Type Confidence: 0.45
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLQSLPLLL LLAVVTLPPA TPTSAARPLT HPRARNHYPS EDLAEEPLMP ASLLLEELQQ  60
   61 TNGQLVNLTR QHDGDTFHTS GLSSACNADT CIGLSSGTAS LVRSTGDGSG QGNDGLNPAT 120
  121 SSLGGGQMEL LTRRLKLQKG RGQVANIDAS GETGCTCRCL PYQRAYREDL GICVDDIHEC 180
  181 SLSPFVSGSS SEKIPFVFLP LKGQIIYPSR EISFASIHTP VCAVTGAQYL GSNGWSDLRN 240
  241 PIDTDYPFRM FRDEGRSFLL WLGEADLRQK MQGRLIVVHL VCRDMTVALN ASNHVKGEPL 300
  301 MPPRNVHSPC VAFRVNGSPV KYAHNVPEVF FQPANSTTLA STSDGMTMRE YVVIGICSLL 360
  361 LGLIYVASVF LYLYMKKRKR HSSRHSLDNL TNDINYPKND QVTYGAPFSR VGSIYSSNSM 420
  421 GLGNGNESNT RTSIGSLKED MGIVKNNPLL QHFPQLSERE HNSGFASDIS NSNSECEMEE 480
  481 KIKTSVLVHP QLSKSPKPSG GTDNAAMDVD DFLQDNECLP AENVAVIDEL MSEEKLENLR 540
  541 AMVSGNVRKK LYFNPAYFEP HLLAEPPQAA IEFLQKIREV IAIAKYKMAS KRYQPSLNII 600
  601 PEEQHPESSS SSPMFNIPLQ QSLAGKGMGD KRNSIEQWLQ SVPNSDATPA PKTLDRPAPP 660
  661 TAKKPSSGSP NKGSLRKEIS APKERPPPPP MQKSKADEGN AKSSSPAPSG PHSSRSTGKS 720
  721 SPEQSPKPKT NVGSTYEGFS AFSVAANVYG FAETGGEIYN NPKFMLADSP AASLRSASSR 780
  781 SKSMKKRSEV LDQFAAANST PTSLTSFDRQ HYNMLRNMKA PEVIYDSLKR EFAAHIPTPD 840
  841 YDSTIEKRIK DIYSSTQSSI PSVPTPDYSS LSRKSLKQFQ PDSPIYRRKS PQYLIVDYET 900
  901 DSLERLEPSK RKSSHSSSSP SSDVSSQLSP SLSTALPLEE EMEISHTVYD RMNGFRKEGE 960
  961 MKKRLAAKHQ HPHPGQQQRQ KEAAARIKYD TPFRGSMTIE VEHEPPSDLE RTDSDQFEPD1020
 1021 TLDRKPKKQS FCDISAWDGH KPIDSDFSQI SSLPDLSRQI SPAPNQGIKP RTASFILRSS1080
 1081 NSFRNLREIY ESPLIAQDNI KYEKKVAQTP EEEGRILTLE AKHSRRQRLM ETSPTHSVMD1140
 1141 ITKVNKTTIT ISSPKPADKA PPTRPKVNQH YCPPLVQSKR PLPPPPPNSS EHQAPDEDAY1200
 1201 SLHSEITGTS EFENSCNNTM SSAISATTEE RTHAKGSRSP KINAKIPEED YEGMYNKKIN1260
 1261 SLRNDYSLTK YLNRRKSQRE EVSKAGPDSP KDVAPEPEFG GSNKSVKEVD VAQFDALSIS1320
 1321 SRSNRSSSHL SERTKEMYRN AGVPVGIAYP QRAASSSGNA SAGGNVQTVY RCEIEQAQLT1380
 1381 AGMQIAIGLK DRAKKAKDLK NAWRKFVTMA ANKFSPSQSP APTYGSKTAA GFLEDDGIAS1440
 1441 IIEDAAQSAG MGQPGSQTYY EQRFGQLDSG YMSTDSTELY KRNVYDRYNF KMPCGRGQII1500
 1501 RVDTIEDNEE ESGPNDNRFE DLEHMVSPSH SRRSPENNAV VACDLSDAES DKTLTRSHSQ1560
 1561 TNSQERNVRG STTTMSSYSS DENGRGRSTC CGSSETDEET NAEDMWESGA ESIETHSVLY1620
 1621 KMIRKS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle