YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24652652, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKALVITTL VVAQAAKLDN KYLPPPASAA SAGGSPGAGL QGPGGGFGGG GGFGGGGAGG  60
   61 GYGGGGGGGP AGGFGGGPGG GGAGGFGGGN NGLGGFANGR PIAPGGGGGG GGAPAPRPSP 120
  121 SGGAPPTSGP PIPILSFVNE NDGDGNYRFS YETGNGIKAQ EEGTVKNKGS ENEIPSVMGS 180
  181 YSYTNPEGEL VEIMYTADEN GFVPSGNALP TPPPIPEAIA KSLAAQGISI LPGGGYSGGP 240
  241 GGQGAGGGGG GGSGYGGGSG FGGGGAGGGS GGGGGGAGGG GGYGSGGGSG RGGAPGGPGA 300
  301 PGGGGFGGQG GGGGYGGAGG GAGRGGSPGG PGSPGGGGFG GQGGAGGGYG GGGGGGRGGG 360
  361 GAPGAPGSPG GGGFGGQGGG GGFGGGGGRG GAPGAPGSPG GGGYGGQGGA GGGYGGGGGR 420
  421 GGGGAPGAPG APGSPGGGGF GGQGGGGGFG GGGGRGGAPG APGSPGGGGF GGQGGGGGYG 480
  481 GGAGRGGAPG APGSPGGGGF GGQGGGGGFG AGGGRGGAGG APGGPGSPGG PGYGGGAGGP 540
  541 GGAGGRPGGP GLPGNQYVPP AAGGGAPGSP GRPGSGGVPG TGSQYIPPAP GAPGGGRGNG 600
  601 EFNPQTGYSY

Type	Start	End	Confidence
Signal Peptide	1	15	0.90
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	610	0.83