YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or47a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSFLQVQKS TIALLGFDLF SENREMWKRP YRAMNVFSIA AIFPFILAAV LHNWKNVLLL  60
   61 ADAMVALLIT ILGLFKFSMI LYLRRDFKRL IDKFRLLMSN EAEQGEEYAE ILNAANKQDQ 120
  121 RMCTLFRTCF LLAWALNSVL PLVRMGLSYW LAGHAEPELP FPCLFPWNIH IIRNYVLSFI 180
  181 WSAFASTGVV LPAVSLDTIF CSFTSNLCAF FKIAQYKVVR FKGGSLKESQ ATLNKVFALY 240
  241 QTSLDMCNDL NQCYQPIICA QFFISSLQLC MLGYLFSITF AQTEGVYYAS FIATIIIQAY 300
  301 IYCYCGENLK TESASFEWAI YDSPWHESLG AGGASTSICR SLLISMMRAH RGFRITGYFF 360
  361 EANMEAFSSI VRTAMSYITM LRSFS

Type	Start	End	Confidence
Cytoplasmic	1	32	0.97
Transmembrane Helix	33	52	0.95
Non-Cytoplasmic	53	58	0.83
Transmembrane Helix	59	80	0.92
Cytoplasmic	81	124	0.96
Transmembrane Helix	125	147	0.80
Non-Cytoplasmic	148	176	0.79
Transmembrane Helix	177	201	0.74
Cytoplasmic	202	257	0.79
Transmembrane Helix	258	281	0.70
Non-Cytoplasmic	282	324	0.50
Transmembrane Helix	325	344	0.65
Cytoplasmic	345	385	0.63