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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: shn-PB, shn-PC, ...
Protein type: Globular with Signal Peptide
Type Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENATTTTAK HYKTAGKQYK TNKVNNTRRA TAAAAAAAAA AATTTVTTAA TPTKKRTYRE  60
   61 TATATIVTQR STNKANIAAA IALAAATEAT ASASASATAT ATDATLTASK AAATAAATTD 120
  121 AASGNSNSSS KPSTSTRDKL GEVPLPTVDS NHIISNNNNN NNNNNTSNNN NNNHHSDNSI 180
  181 SENNYEFKSR DKASLSDSKM TLQQMAAVSS NQEPVAPNVA NTMSNSSIIN SQQTTVNATP 240
  241 ATDEAPLGDR SNISRYLHKK FKRLASTTEV DSWSATNGGG ALQASGDAVR TTSLSSNSSL 300
  301 SPPPTTPLAN GHHLMTQQQS HQQVQQQQQQ QQTPPPSVAI HEFSANFVNS NHVNAIGHEE 360
  361 SIISNSGYKA AGRTRTPLAN SNSNTNSTSN SNSNHAANAT LSPASFAQHQ QLTQPTTVSP 420
  421 GIPGGAAAPN PACEKSGRYV CQYCNLICAK PSVLEKHIRA HTNERPYPCD TCGIAFKTKS 480
  481 NLYKHCRSRS HAARARGLEV PADADDGLSD QDAELSNSSS ELPSRAGSPY EEPINSPTPS 540
  541 PSTLSAAKSA YIQQPPLPTY MQQLPLGSPA AGTLPPTTAD NHHSATAQHR QSIDYKPYKP 600
  601 KFHNASLYSC SSKELQQQQQ QLQIQQQQQQ HQLAQQKLSI QLPLVQQPSL AHPTLSPSTQ 660
  661 MKMKHHINSH QIQLQLQQQQ SLLAQQSLLA AMPPGGVYYL GQPSYYNQDT AAAIHQHALA 720
  721 IQQFQIHLAQ QQQQQQQQHP PLVKATPPMQ QPPSLPPQQL VRANSQISSV ATAPATPTPA 780
  781 ANLSTFASSS GGKQVNVAKV QEHISKLISQ NEAIVENKEI LLQKKYPKQL SRSRSFNNAN 840
  841 SNNASQHGSN ASALHANNSQ NNTNAQMPER ETKVNLAQAI FQKQQHQLQQ QQQQQITQQQ 900
  901 QQQLEQQNYY TYIQQQQECQ QQQLEPPNGV VKRNAYKPGV VMTTPVKQQQ QLPPPPSPLP 960
  961 MQTMQYRQDP ATPVTKIEQP TTAVPVMPLN LSAKPKPTLV TVPVSSLSTS SLAPTPTTST1020
 1021 NPTSSSKTAP PPAQVNNSII KNLLLNARGL AVPIGEGDDA VYSCPICASE FRSADDLKLH1080
 1081 NSTYCQDASS SAPMSPASSP FRSNSISLSL PELKSHMANS KNPLSLAKLA WSQLKTKRSS1140
 1141 LVLSRLSAAQ TPARTSTVTA PTVTASAPAP AVATVTAPSS APAPQIEALR FVDAPLPSPG1200
 1201 PLLGKTPLVD YAQQSTPRKA QDSVVITKMH EDRQFVIEAQ PAKRIKTSDL VVASSSQQPT1260
 1261 SFNFSFNNQN SSNSVPELQS SKEERLRRFT SSGGSMIPIS ECPDLDNSPK MIRTPLLSGG1320
 1321 SFQDVSVKVN NETGSSSKER KLMALVSGSG LLGVSSGPQH FQFPPINSIT AFNPLTLPPM1380
 1381 SGGDKTTPVT PIPHVPGMPG PGSLTPQMPL LPPPPQQLQL PIPSSRGRSP NRKQPSPLLL1440
 1441 GGGSGELKAL SPFGGVQNVP SEFSRQPPTP AQRQALQWNS KEAPKKAPFN FLRMADNVKT1500
 1501 TEPEVRHFNL ENVISGKQQE LPLTPLHVDT PNGNAPEETS PVASASASAK SKFLRPTSLP1560
 1561 LKPGTFTPKR HHGITPTANT LPLISPETPR PSKSCVQLYL NGHAYTYLGL KCSTKMFYCT1620
 1621 VNCPQPSYVA GMHKLSMYSV WQVCEENQPH PLGFKLKQVM ALYDSRQRML GNGSSTAMAG1680
 1681 SGKLSYNLVA SQQIVSSPST SSTSSAFYQG PLKTPPTVTI AALSEANVAA KANEEAQAKK1740
 1741 LETSPSGQPL VGGYESHEDY TYIRGRGRGR YVCSECGIRC KKPSMLKKHI RTHTDVRPFT1800
 1801 CSHCNFSFKT KGNLTKHMQS KTHFKKCIEL GINPGPMPPD SEFLDVDMDF DQQSSTSAGG1860
 1861 RTSSMAGESD SDDYSDNESE SSDTDESKSR QKEHEAARGL LSLSMTPPIP QSVSPYPQLQ1920
 1921 DTPLPAASPA NSIGSSGSQP KRLVCSFTSP KPPFDYQKQE QYYSNPEESK PKRSVANEES1980
 1981 APMDLTKPRG SILLISPSPV SVPAHDLPKS QAQQMHDVIF GTSGNESGFM KTLISVSDKV2040
 2041 RISAEMEEQA KHEAEGEDVQ LQTYIKEHAL HQAKIKQSQF SRSYLINTLY TAASPVMSSS2100
 2101 STLFTANSRP VMSVNEVPSI EVHEVKTPEA IESPRSAPEQ APVILAQIAQ EENEEPNIAE2160
 2161 PHNANLPAAV QQPDVNEFTG VLGNPTAPPT SSVTATSVST TTAAPVAPSS TANSTQPAQR2220
 2221 TVIVGEDGFK SSTPTSKSGD LQHVSYGRGV PPAPIAGDAR PTCTMCSKTF QRQHQLTLHM2280
 2281 NIHYMERKFK CEPCSISFRT QGHLQKHERS EAHKNKVMMT STFGVPTTSN PRPFECTDCK2340
 2341 IAFRIHGHLA KHLRSKTHVQ KLECLQKLPF GTYAEIERAG ISLTEIDTSD CENSLISLKL2400
 2401 LAQKLQEKDP GKLSSYTTPS GMMQLAQDAA GPVSQDSASE DGFSAAIASA IASLDNDSAG2460
 2461 NTPKRASSMS EDETVANGLN HSLKRRLPGS FSSTGEESDN PPESSGEKRA RSGQELPVPV2520
 2521 AVPVAASAAA SN

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