YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or46a-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTEDFYKYQ VWYFQILGVW QLPTWAADHQ RRFQSMRFGF ILVILFIMLL LFSFEMLNNI  60
   61 SQVREILKVF FMFATEISCM AKLLHLKLKS RKLAGLVDAM LSPEFGVKSE QEMQMLELDR 120
  121 VAVVRMRNSY GIMSLGAASL ILIVPCFDNF GELPLAMLEV CSIEGWICYW SQYLFHSICL 180
  181 LPTCVLNITY DSVAYSLLCF LKVQLQMLVL RLEKLGPVIE PQDNEKIAME LRECAAYYNR 240
  241 IVRFKDLVEL FIKGPGSVQL MCSVLVLVSN LYDMSTMSIA NGDAIFMLKT CIYQLVMLWQ 300
  301 IFIICYASNE VTVQSSRLCH SIYSSQWTGW NRANRRIVLL MMQRFNSPML LSTFNPTFAF 360
  361 SLEAFGSIVN CSYSYFALLK RVNS

Type	Start	End	Confidence
Cytoplasmic	1	37	0.79
Transmembrane Helix	38	57	0.92
Non-Cytoplasmic	58	65	0.85
Transmembrane Helix	66	86	0.90
Cytoplasmic	87	128	0.96
Transmembrane Helix	129	147	0.91
Non-Cytoplasmic	148	172	0.81
Transmembrane Helix	173	194	0.73
Cytoplasmic	195	249	0.86
Transmembrane Helix	250	272	0.52
Non-Cytoplasmic	273	284	0.50
Transmembrane Helix	285	307	0.63
Cytoplasmic	308	348	0.47
Transmembrane Helix	349	377	0.57
Non-Cytoplasmic	378	384	0.38