YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG2292-PA
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.52
Transmembrane Helix	7	27	0.68
Non-Cytoplasmic	28	431	0.87
Transmembrane Helix	432	451	0.89
Cytoplasmic	452	469	0.94
Transmembrane Helix	470	493	0.87
Non-Cytoplasmic	494	531	0.85
Transmembrane Helix	532	552	0.84
Cytoplasmic	553	579	0.86
Transmembrane Helix	580	598	0.96
Non-Cytoplasmic	599	604	0.75
Transmembrane Helix	605	622	0.93
Cytoplasmic	623	634	0.81
Transmembrane Helix	635	652	0.85
Non-Cytoplasmic	653	658	0.60
Transmembrane Helix	659	679	0.70
Cytoplasmic	680	732	0.78
Transmembrane Helix	733	755	0.88
Non-Cytoplasmic	756	774	0.81
Transmembrane Helix	775	798	0.87
Cytoplasmic	799	809	0.90
Transmembrane Helix	810	829	0.96
Non-Cytoplasmic	830	840	0.82
Transmembrane Helix	841	862	0.91
Cytoplasmic	863	894	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWIAYALVVH VLLLGSIFVI YFRSPVITGL TPQKHLLYYG LEPPANRLVL IVTDGFRADS  60
   61 FFEENCRYVP NLRKIFLREG VVGVSRTRVP TETRPGHITL IAGLYEDPSA VLRGWKSNPI 120
  121 DFDTVFNRSS QTYAWGANDV LNVFSHVSNG GEINLRFYNH DLDFSPGYDA YEEDEWVFKR 180
  181 VKLLLQQKRE ALQRAQNVVF FLHLLGLDTA GHVHKPGAPK FRRTLEKTEK GVYAIYQEFE 240
  241 RVFPDKRTAY LLTADHGMTD SGAHGSGSPH ETDTPFMLWG AGASRAVPKP GGRTFMPNNE 300
  301 GPAMPLHELE QAQLTPLMSA LLGLAPPMNN FGKLPLGYLN VSKEYEAMAA HVNALQLLEQ 360
  361 YVALQKQHKK GFFADILLEY DVLNAEAIKR YKDTIVQLQK KREYSLCIDK SQVIMSQALE 420
  421 GIDYYHGYYR RVLLLSTTST FLGWMFYIYR LLSRNRASKV ELVLERSNKI VRVSIVSSVI 480
  481 VLIICLLSQG TPLDISFYLL LPYFVWLKAL QPWNINFSSS PASAYSVPAL QTSMWQLVLL 540
  541 IACAELMVFT FFERRLIALC FCVFACYNSW ENFQWKSRDF FSWLALVLIL SCFPLLPLSV 600
  601 GYQNGYLLGA GVIVIFTNSF WNSKSRLCYR NHTKYSNALI LLQTILCAYL HSNGINIPIP 660
  661 LKLASWLYLV YAFASILLSK ESRLDLRLAQ IGFNLGSLYA TLCTSYEAVF VQLLTIELNI 720
  721 SLRAQSARAE RSVLRLAFTL LLYTFFSLFG SGNIASISSF DPNIARCYLS HFAPFVIMGL 780
  781 VLLKLLVPVV LIMSVIYANS EFVRQHEEQI FICLLLICDV MGLNFLFLVR NQGSWLDIGT 840
  841 SISHFVIMEV TTLVMLVIFY TAKQLLRVIP WEEIDFKMLP LRLIHWDVIS AKHH