YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG1698-PA, FBpp0...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.97
Transmembrane Helix	81	102	0.88
Non-Cytoplasmic	103	109	0.83
Transmembrane Helix	110	129	0.92
Cytoplasmic	130	154	0.86
Transmembrane Helix	155	178	0.83
Non-Cytoplasmic	179	249	0.96
Transmembrane Helix	250	271	0.90
Cytoplasmic	272	278	0.89
Transmembrane Helix	279	299	0.93
Non-Cytoplasmic	300	321	0.90
Transmembrane Helix	322	344	0.90
Cytoplasmic	345	360	0.84
Transmembrane Helix	361	381	0.91
Non-Cytoplasmic	382	422	0.89
Transmembrane Helix	423	444	0.87
Cytoplasmic	445	456	0.80
Transmembrane Helix	457	477	0.93
Non-Cytoplasmic	478	489	0.84
Transmembrane Helix	490	513	0.91
Cytoplasmic	514	531	0.94
Transmembrane Helix	532	554	0.92
Non-Cytoplasmic	555	569	0.89
Transmembrane Helix	570	589	0.96
Cytoplasmic	590	654	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METTINNNNN DNGYMNQAYV GSLNASTISI PGAYKPNESS NGKKTLSEGS GSAPPPGHGD  60
   61 SPSGVEAGQP GKKRDSWNND IEFLMSCIAL SVGLGNVWRF PFTALENGGG AFVIPYLIVL 120
  121 ILVGKPVYYL EMLLGQFSSR GSVKVYDFSP IMRGIGYGQV LATGIVTTYY ATLMALTLRY 180
  181 FVDSFYPTLP WSYCREEWGT ECLDSGPQEA SRATSLAGSG VRTTSAEFYF TNIILREKAS 240
  241 IDDGIGYPSW SLALALAVAW IVIAGIMFKG VKSSGKASYF LALFPYVVML VLLVRALTLP 300
  301 GAFDGVLYFL RPQWHKLLEP QVWYAAVTQV FFSLAICFGN IIMYASYNRF GHNIYRDANI 360
  361 VTTLDTFTSL LSGVIIFGIL GNLAYENNTT DIASVVNGGP GLAFISYPDA IAKFKWLPQL 420
  421 FSVLFFLMLF VLGIGSNVGM ASCMSTVIKD QFGHLKNWTV VVGIAIVGYF LGLLYITPGG 480
  481 QFLLNLVDYF GVTFVALVLA IFELVTIAWI YGVKRLCRDV EFMIGIKTSL YYRICWAVVT 540
  541 PLLMLTILIY TLVLYEPLKY KDYTYQSGVY VFGWCLSAFG VGQVLFWAIP AVRKQPSHLG 600
  601 LWARIRKAFE PLPNWGPSDP QTLKRYQLFV QEGNANALFR RSSIWHKIYD NIFG