YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or45b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYPRFLSRNY PLAKHLFFVT RYSFGLLGLR FGKEQSWLHL LWLVFNFVNL AHCCQAEFVF  60
   61 GWSHLRTSPV DAMDAFCPLA CSFTTLFKLG WMWWRRQEVA DLMDRIRLLI GEQEKREDSR 120
  121 RKVAQRSYYL MVTRCGMLVF TLGSITTGAF VLRSLWEMWV RRHQEFKFDM PFRMLFHDFA 180
  181 HRMPWFPVFY LYSTWSGQVT VYAFAGTDGF FFGFTLYMAF LLQALRYDIQ DALKPIRDPS 240
  241 LRESKICCQR LADIVDRHNE IEKIVKEFSG IMAAPTFVHF VSASLVIATS VIDILLYSGY 300
  301 NIIRYVVYTF TVSSAIFLYC YGGTEMSTES LSLGEAAYSS AWYTWDRETR RRVFLIILRA 360
  361 QRPITVRVPF FAPSLPVFTS VIKFTGSIVA LAKTIL

Type	Start	End	Confidence
Cytoplasmic	1	37	0.62
Transmembrane Helix	38	59	0.76
Non-Cytoplasmic	60	71	0.72
Transmembrane Helix	72	92	0.86
Cytoplasmic	93	129	0.88
Transmembrane Helix	130	152	0.91
Non-Cytoplasmic	153	198	0.85
Transmembrane Helix	199	221	0.85
Cytoplasmic	222	275	0.87
Transmembrane Helix	276	296	0.89
Non-Cytoplasmic	297	301	0.77
Transmembrane Helix	302	323	0.85
Cytoplasmic	324	367	0.86
Transmembrane Helix	368	390	0.53
Non-Cytoplasmic	391	396	0.52