YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or45a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDASYFAVQR RALEIVGFDP STPQLSLKHP IWAGILILSL ISHNWPMVVY ALQDLSDLTR  60
   61 LTDNFAVFMQ GSQSTFKFLV MMAKRRRIGS LIHRLHKLNQ AASATPNHLE KIERENQLDR 120
  121 YVARSFRNAA YGVICASAIA PMLLGLWGYV ETGVFTPTTP MEFNFWLDER KPHFYWPIYV 180
  181 WGVLGVAAAA WLAIATDTLF SWLTHNVVIQ FQLLELVLEE KDLNGGDSRL TGFVSRHRIA 240
  241 LDLAKELSSI FGEIVFVKYM LSYLQLCMLA FRFSRSGWSA QVPFRATFLV AIIIQLSSYC 300
  301 YGGEYIKQQS LAIAQAVYGQ INWPEMTPKK RRLWQMVIMR AQRPAKIFGF MFVVDLPLLL 360
  361 WVIRTAGSFL AMLRTFER

Type	Start	End	Confidence
Cytoplasmic	1	30	0.81
Transmembrane Helix	31	52	0.72
Non-Cytoplasmic	53	63	0.58
Transmembrane Helix	64	81	0.64
Cytoplasmic	82	128	0.94
Transmembrane Helix	129	150	0.91
Non-Cytoplasmic	151	174	0.90
Transmembrane Helix	175	195	0.90
Cytoplasmic	196	254	0.89
Transmembrane Helix	255	274	0.45
Non-Cytoplasmic	275	281	0.42
Transmembrane Helix	282	303	0.73
Cytoplasmic	304	344	0.64
Transmembrane Helix	345	367	0.83
Non-Cytoplasmic	368	378	0.66