YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24652037, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPIKAQSTG SPKKFNVFAH VKYEHLVAGV SGGVVSTLIL HPLDLIKIRF AVNDGRTATV  60
   61 PQYRGLSSAF TTIFRQEGFR GLYKGVTPNV WGSGSSWGLY FMFYNTIKTF IQGGNTTMPL 120
  121 GPTMNMLAAA ESGILTLLLT NPIWVVKTRL CLQCDAASSA EYRGMIHALG QIYKEEGIRG 180
  181 LYRGFVPGML GVSHGAIQFM TYEELKNAYN EYRKLPIDTK LATTEYLAFA AVSKLIAAAA 240
  241 TYPYQVVRAR LQDHHHRYNG TWDCIKQTWR YERMRGFYKG LVPYLVHVTP NICMPASFHL 300
  301 SKGSWQLEFE GYRGFYKGLK ASLTRVVPAC MVTFLVYENV SHFLLARRKR IETKEDASDV 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	84	0.64
Transmembrane Helix	85	104	0.65
Non-Cytoplasmic	105	123	0.73
Transmembrane Helix	124	144	0.67
Cytoplasmic	145	279	0.73
Transmembrane Helix	280	299	0.63
Non-Cytoplasmic	300	320	0.79
Transmembrane Helix	321	341	0.56
Cytoplasmic	342	360	0.65