YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19921886, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALRTSITI QESKKQPFKP GRVWELCGQP GVGKTQLLYT LALNFVWKHS QAVLFIDTKR  60
   61 EFSCKRIQDM LRAREVDEEA SERAMKGIRV VQAATGADIN DLLKSFDHQL TAETHASMQT 120
  121 KLVLIDSLAA CFAFYRGRRM RDVRKSVLTE LACKIRKLAL RGVAFVIGNI VVVMMESKMA 180
  181 TMRK

Type	Start	End	Confidence
Non-Cytoplasmic	1	121	0.63
Transmembrane Helix	122	137	0.29
Cytoplasmic	138	157	0.60
Transmembrane Helix	158	175	0.66
Non-Cytoplasmic	176	184	0.68