YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8083-PC, CG8083-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.96
Transmembrane Helix	59	76	0.94
Non-Cytoplasmic	77	101	0.87
Transmembrane Helix	102	124	0.91
Cytoplasmic	125	149	0.94
Transmembrane Helix	150	171	0.92
Non-Cytoplasmic	172	178	0.84
Transmembrane Helix	179	198	0.90
Cytoplasmic	199	204	0.82
Transmembrane Helix	205	225	0.80
Non-Cytoplasmic	226	262	0.73
Transmembrane Helix	263	286	0.90
Cytoplasmic	287	296	0.66
Transmembrane Helix	297	320	0.71
Non-Cytoplasmic	321	341	0.51
Transmembrane Helix	342	376	0.71
Cytoplasmic	377	422	0.77
Transmembrane Helix	423	446	0.84
Non-Cytoplasmic	447	520	0.82
Transmembrane Helix	521	542	0.90
Cytoplasmic	543	555	0.75
Transmembrane Helix	556	579	0.90
Non-Cytoplasmic	580	603	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAESSKGAI NNGYELDHKE LDIRDSEEFT EHPLDDTSEV ANKKGYFEKN PKVARLVRIS  60
   61 IYVLLHLCVV GYFSYATYHY HDITNYECYW KDNPLCGINF CTGYGMLLLL LGFIYLGLFY 120
  121 YYVFKPMVGH SLHRNYIKPF SKKWHNFSRT RVVSLASIAL LLALLAIFVY FECRDETQKL 180
  181 VSLVAPCFFI LCGYVFSTNR RAINWRIVIT GITCQFLLGI FCIRWEVGRK IFECLGNKVA 240
  241 TFLGYATDGA EFVFGDFLVN NNVFAFAILP VIFFFSFFIS ILYYMGTMQW VVIKLGWILQ 300
  301 QILGTTVCES VTAAANIFLG MSESPLLIRP YINKLTKSEI HSIMVSGFAT VSGTVLAAYL 360
  361 SFGASAAHLI TSSVMAAPAT LAISKLYMPE TEESQTSSDS IELEKSQDSS LLDAASSGAS 420
  421 NAVPIVLGII ANIVAFVAFI AFLNGLVSWF GYLVGLEQID FEWIFSKLFI PLVWAMGVPK 480
  481 EDCDIIAKVV ATKTIINEFV AYERLGQYIE NNDITARSAG IATFAICGFA NPSSLGILIG 540
  541 SLSAMAPHRR STITAVAFRA FVVGSIVCFV SASFAGILIQ EDDERANYNR IFEKLGRKNV 600
  601 TQF