YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG14767-PB, CG14...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRIHLKMGP QRNQLHSNNN NGAAGSSSST GNRHLKEFTC CFGLHVHTAT LMIGLWHLFL  60
   61 NILALSVLAV IWRNPEMMDE LEGGTHDYTV DLSAPALPTP LSKVEPPYAY RDHSLNYRKR 120
  121 YQNFDMGGLV CTCMIAITLM MIYGTIKGKP SHLLPFFCLQ LFDFAITTLT AAGYLCYLQA 180
  181 IHSIIAESHR LPWREKLLEL PPEELVVVVL VVFICIVFLK AYCIGIVWRC YKYLTLRQQH 240
  241 VRTLFPFLEP PTGVHSVGGT FGAEERSYST LLPNYDEAIA QYLKQAPPPS YQVAMSNYEE 300
  301 GEDAAVGGAE VNPSVAPLFV ALGAATTANV ASNTDDNMDN NNDQPNNNNT MHVNANTPPM 360
  361 RRSDAAVNAN VDEEADDLEV IDAGVDVIGG IPPPPPYNDV ADAQVQVPSQ SPLHRQPNIP 420
  421 GQVFGGRDES QA

Type	Start	End	Confidence
Non-Cytoplasmic	1	52	0.58
Transmembrane Helix	53	72	0.89
Cytoplasmic	73	123	0.62
Transmembrane Helix	124	146	0.90
Non-Cytoplasmic	147	163	0.56
Transmembrane Helix	164	185	0.83
Cytoplasmic	186	204	0.59
Transmembrane Helix	205	228	0.90
Non-Cytoplasmic	229	432	0.64