YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24586601, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.51
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	53	0.51
N-region	1	44
H-region	45	50
C-region	51	53
Cleavage Site	53	54
Non-Cytoplasmic	54	780	0.97
Transmembrane Helix	781	805	0.91
Cytoplasmic	806	819	0.96
Transmembrane Helix	820	840	0.94
Non-Cytoplasmic	841	847	0.84
Transmembrane Helix	848	867	0.94
Cytoplasmic	868	892	0.89
Transmembrane Helix	893	916	0.89
Non-Cytoplasmic	917	941	0.95
Transmembrane Helix	942	963	0.91
Cytoplasmic	964	975	0.92
Transmembrane Helix	976	996	0.92
Non-Cytoplasmic	997	1009	0.75
Transmembrane Helix	1010	1031	0.91
Cytoplasmic	1032	1051	0.93
Transmembrane Helix	1052	1074	0.67
Non-Cytoplasmic	1075	1264	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATMATGNQ LGPGAPRGIK SAATLEASST TTAPPRAAGV SVAAATSAPA ATAATAASAA  60
   61 ITAAIQATAA TSPTREQHTL PPRPAVGQMA RINVAAIIED QIGRAVIPST TNKAETPATP 120
  121 STTSTSTPTT EIILAKTKRS ESDKTNKIGQ SVQRDDIKFN PDAELTHGYA NATEAWPTMT 180
  181 TANIVAAPAA PTISPAITST ATRIGGKAVP TPRLLGSGAA NVAQILAKSL DSPSPSSSSG 240
  241 WPVKHAAVLE GDVILGGLMM VHSREDSITC GPIMPQGGIQ ALEAMLYTLD QVNKQQLLPN 300
  301 VTLGAHLLDD CDKDTYGLEM AVDFIKGKCI PLFRVRKVIS GVVGAASSVT SIQVANLLRL 360
  361 FRIPQVSYFS TSPELSNKQR FEYFSRTIPS DHYQVKAMVE IVKRMGWSYV SIIYEESNYG 420
  421 IKAFEELEEL LARHNICIAI KEKLVKDSGV AEDIAYDNIV QKLLTKPRAR GAIIFGSDQE 480
  481 VRQVMRAVRR ANATGSFSWI GSDGWSARNL VSDDYEPEVE GTLSVQPQAN PVRGFEEYFL 540
  541 SLTVENNQRN PWFVEFWEDH FQCRYPGSTS TPYNNYTKQC TTKERLSRQN TDFEDQLQFV 600
  601 SDAVMAFAYA LRDMHRDLCG GGPSLCEAMK PTKGADLLKY LRKVEFEGLS GDEFRFDGNG 660
  661 DGPARYNIIH FKQSQAGQYH WVKVGEYTEG ELRLNMTEVK FKRLSPKPPE SVCSLPCLVG 720
  721 QAKKYVEGES CCWHCFNCTT YQIRHPDDET HCKLCKLGTL PDAHKQYCRP IPEIYLRPES 780
  781 AWAIGAMAFS ATGILVTLFV MGVFVRHNDT PIVRASGREL SYILLAGIFM CYGVTFALVL 840
  841 KPTNIVCAIQ RFGVGFCFTV VYAALLTKTN RIARIFKAGK QSAKRPSFIS PKSQLVICAC 900
  901 LVSVQILING VWMVIAPSHA MHHYPTREDN LLVCDSYIDA SYMIAFSYPI FLIVICTVYA 960
  961 VLTRKIPEAF NESKHIGFTM YTTCVIWLAF VPLYFGTANH VPLRITSMSV TISLSASVTI1020
 1021 ACLFSPKLYI ILIRPERNVR QSMMPPRYGN MHRTAGTGPS SMMAAAVVTA ATCAQEEKIQ1080
 1081 KHITPTNTEN SLKTKKLCEM ATQTISSIIT SLDINAYNQI PYADQYVPNN ATTATTTPTD1140
 1141 KGSGNGNSNS NSNTNGSSNS NSNSNGDGDV ATEQVVANNN KINQRQHGQP AVAFAITSTN1200
 1201 NHISGPAATI TTTAATGETT TEALVATITT PLATVDGSET MSVAPNNGHG NNGSQRPPVL1260
 1261 QTNL