YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG2121-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.99
Transmembrane Helix	62	81	0.95
Non-Cytoplasmic	82	95	0.88
Transmembrane Helix	96	116	0.92
Cytoplasmic	117	122	0.84
Transmembrane Helix	123	143	0.91
Non-Cytoplasmic	144	151	0.79
Transmembrane Helix	152	174	0.90
Cytoplasmic	175	194	0.92
Transmembrane Helix	195	213	0.91
Non-Cytoplasmic	214	278	0.95
Transmembrane Helix	279	299	0.95
Cytoplasmic	300	334	0.95
Transmembrane Helix	335	355	0.80
Non-Cytoplasmic	356	368	0.63
Transmembrane Helix	369	390	0.90
Cytoplasmic	391	396	0.71
Transmembrane Helix	397	417	0.92
Non-Cytoplasmic	418	429	0.76
Transmembrane Helix	430	453	0.84
Cytoplasmic	454	463	0.63
Transmembrane Helix	464	480	0.58
Non-Cytoplasmic	481	487	0.47
Transmembrane Helix	488	510	0.84
Cytoplasmic	511	522	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYPSDTSDA NNEELALEHS VAHGNVHGNG TGTGGSSPGT TTAPNGDNKV NQRHYEPAER  60
   61 FIITKNVVVI GLAFMIHFTA FHGTSNLQSS VNADKALGTT TLAVIYGSLI LSNIFLPMTV 120
  121 IRWFGCRLTM ALALFAYMPY IAAQFYPRFE TLIPAALMVG FGGGPLWCSK CTYLSTVSEA 180
  181 LTQVRGNKSR KDVNTVKFFG LFFIFYQMAQ VWGNLISSSV LTLSAPAAQS AANDSFELEV 240
  241 QRELERNRVA ELCGARFCPG VGAEANPNLV PPAPEQIQLL NSIFLTCMAA AVVMMIFGVS 300
  301 SLKRYGVKRG DTGDGMSGLK LLTVTINLLR KRRQILMLPI TMFIGLEEAF LAVDFTRSFV 360
  361 ACGWGISRIG FAMICFGVAN AVAAGIAGAL VERIGRVTLA ALCAVVNLCL LTYMYTWEAR 420
  421 EGDYMSYCTF AAVWGICDGV WLVVVNAFYG ILFPNHLIAA YSNFRLWEST GSVIGYVISS 480
  481 QLCTSTKLVI LIIFILVGCV GYGLIEYRFW QKQKNLEVML SD