YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8713-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRRSSFRR REKPAFERFK DHCRHFTAFM FSNVGIILLV TFYIIGGAFI FQSIEIFEYE  60
   61 RLKSEKPHRF IARNFSGECL SRIWELTAEN ISFFDHHAYR RRVNDVLLDY QRAIVKKQLK 120
  121 GPDVEQWSFS GAFLYSLTVI TTIGYGNITP HSECGKLVTI LYAIIGMPLF LLYLSNIGDV 180
  181 LAKSFKWIYS KVCLCRICPG VAKRRIIRER RKMRQLARAL QMHDMENARG SSSYTSTSST 240
  241 TSSNSSSSEY TRSSRQSSSL VDIQYTESDS DIEREIRGST DEITVPVTVC VFVMVGYILW 300
  301 GALLFGRWED WNYLDGSYFC LISLSSIGFG DLVPGDRVIT ADRDKVEVSF ILCAIYLLLG 360
  361 MAVIAMCFNL MQEQVVHNIR AIKRGFKACF RCRTS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	45	0.88
Non-Cytoplasmic	46	128	0.92
Transmembrane Helix	129	149	0.87
Cytoplasmic	150	157	0.77
Transmembrane Helix	158	177	0.93
Non-Cytoplasmic	178	186	0.75
Transmembrane Helix	187	207	0.82
Cytoplasmic	208	282	0.98
Transmembrane Helix	283	304	0.93
Non-Cytoplasmic	305	313	0.82
Transmembrane Helix	314	335	0.80
Cytoplasmic	336	347	0.78
Transmembrane Helix	348	368	0.93
Non-Cytoplasmic	369	395	0.84