YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sut3-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.96
Transmembrane Helix	8	31	0.91
Non-Cytoplasmic	32	63	0.92
Transmembrane Helix	64	86	0.92
Cytoplasmic	87	94	0.86
Transmembrane Helix	95	115	0.94
Non-Cytoplasmic	116	122	0.80
Transmembrane Helix	123	145	0.88
Cytoplasmic	146	154	0.81
Transmembrane Helix	155	177	0.88
Non-Cytoplasmic	178	186	0.87
Transmembrane Helix	187	208	0.93
Cytoplasmic	209	267	0.96
Transmembrane Helix	268	291	0.86
Non-Cytoplasmic	292	303	0.75
Transmembrane Helix	304	326	0.86
Cytoplasmic	327	334	0.87
Transmembrane Helix	335	355	0.92
Non-Cytoplasmic	356	365	0.65
Transmembrane Helix	366	390	0.82
Cytoplasmic	391	401	0.86
Transmembrane Helix	402	422	0.90
Non-Cytoplasmic	423	429	0.73
Transmembrane Helix	430	451	0.91
Cytoplasmic	452	476	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADGKQGWTC LLVLICVCIT VGTVIPVGYA FGVMNAPSAF IRSWIMESVL ERYSSRLGDS  60
   61 QMTIIMSTVV SIFLIGGMLG APFAPIFSAR LGRRGILTLS GLLLLVSCIC QLFCRMANSI 120
  121 EMLLLGRLIG GLAAALIYAT QPMYLVELAP AELSGSVGVF TCIGLTGGIV LGQVFSFDFL 180
  181 LGTEKLWPYA LSGSAIFVLI GLAPIFWFPE SPRFLMSQGR REKARVTLMR LRRDEGRVNA 240
  241 EMAEFEVSST DEGQVTMKQV LCNSKLKLPL FIVCSFHFVQ QMSGISAIWF YSIEIFTQSG 300
  301 FTAAVAMWLN FALGLLNFIS ALMGPWLMRS FNRRLMMTIS CLCSAIFLVL LVVGLELMST 360
  361 IHEFSFTCIA FLSLYIITFN MGLGPTPYFI GSEIFETASR PSAMALGSFF NWLANFVLNM 420
  421 IFPTLNSATG PFVFLLCVVF CAYGFLLTYR YLPETRNRDA KDVAQLMENG FKSKIK