YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sut1-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.97
Transmembrane Helix	38	60	0.91
Non-Cytoplasmic	61	90	0.92
Transmembrane Helix	91	112	0.93
Cytoplasmic	113	121	0.84
Transmembrane Helix	122	143	0.93
Non-Cytoplasmic	144	150	0.80
Transmembrane Helix	151	172	0.94
Cytoplasmic	173	182	0.82
Transmembrane Helix	183	204	0.91
Non-Cytoplasmic	205	212	0.81
Transmembrane Helix	213	235	0.88
Cytoplasmic	236	298	0.97
Transmembrane Helix	299	321	0.84
Non-Cytoplasmic	322	338	0.84
Transmembrane Helix	339	359	0.91
Cytoplasmic	360	366	0.88
Transmembrane Helix	367	387	0.95
Non-Cytoplasmic	388	393	0.76
Transmembrane Helix	394	414	0.94
Cytoplasmic	415	432	0.83
Transmembrane Helix	433	453	0.93
Non-Cytoplasmic	454	459	0.75
Transmembrane Helix	460	482	0.89
Cytoplasmic	483	507	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKSQPAEA QQLYPQPNRV ELLSAQTDPS QKPRWGNLLL LVALATTFGG AVSTGYCIGV  60
   61 INAPSKLMKV WCNQTLHDTY GSNLSAGGLD LLWSCVVSVF LVGGAIGSLG GAGAANKFGR 120
  121 KACFLICGAL FTVGAVLFFF CRAASSVEML VIGRFVVGLA SGLVTATLPM YLSEVAPMAL 180
  181 RGTLGVFIAV GVTGGVVVGQ VCSLANVFGT EDLWHYALTA YMFLILVCYL PSYLFPESPK 240
  241 FLYIVKGNRA AAKRELQRLR GKDAEELIAQ EMAEMEAESN AKVQTSSFCD VLRDPRLTLP 300
  301 LIIVCCFHGG QQLSGINAIF YYSVSIFEKA GLSTVDAQWA NLGAGCLNLA VSLLGPWLMA 360
  361 KCNRRTLMMF SCALCSVFLF TIAFVLFYID QVSWFAIACI VCIMGYIFFY QFGLGPIPYF 420
  421 IGAELFEVAP RSVAMSMGSL ASWTCNFIIG ISFPLLQNAW GAFVFLPFSI TCVLLFLLTK 480
  481 FYLPETRGRD PSEVAPLVSK GFRSKVK