YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG30379-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSPKKETGF LDKASLYAPP TENESQDTNS DPKDGEHLVE NGMISHDLIV KSNVFEDPTI  60
   61 RMGFVRKVFG ILLAQLLFTL AVIAIFSYHQ PTKDFMHENF LLVLVAMIVN IIVLSTIVCV 120
  121 ENVRRRHPVN LICLALYTFT MSLLLGTASS QMDSNVVISA VAITTLLVIA LSIYAVQTKY 180
  181 DYTAAGGVIL TFVIILIVLS VCGVWMPDFV DSLPITCLCT FIGCFFLIAD MQSIVGGNRS 240
  241 EQLDPEEYVF AALTLYVDVV RIFIYILRIL EKFY

Type	Start	End	Confidence
Cytoplasmic	1	67	0.99
Transmembrane Helix	68	89	0.92
Non-Cytoplasmic	90	99	0.83
Transmembrane Helix	100	120	0.95
Cytoplasmic	121	128	0.87
Transmembrane Helix	129	148	0.95
Non-Cytoplasmic	149	155	0.80
Transmembrane Helix	156	176	0.94
Cytoplasmic	177	183	0.83
Transmembrane Helix	184	205	0.92
Non-Cytoplasmic	206	211	0.76
Transmembrane Helix	212	231	0.89
Cytoplasmic	232	274	0.62