YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8791-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.90
Transmembrane Helix	17	37	0.77
Non-Cytoplasmic	38	63	0.75
Transmembrane Helix	64	84	0.83
Cytoplasmic	85	91	0.81
Transmembrane Helix	92	112	0.95
Non-Cytoplasmic	113	118	0.93
Transmembrane Helix	119	142	0.87
Cytoplasmic	143	151	0.90
Transmembrane Helix	152	176	0.87
Non-Cytoplasmic	177	183	0.84
Transmembrane Helix	184	205	0.92
Cytoplasmic	206	244	0.96
Transmembrane Helix	245	266	0.89
Non-Cytoplasmic	267	288	0.88
Transmembrane Helix	289	310	0.87
Cytoplasmic	311	322	0.88
Transmembrane Helix	323	344	0.85
Non-Cytoplasmic	345	349	0.81
Transmembrane Helix	350	371	0.94
Cytoplasmic	372	383	0.76
Transmembrane Helix	384	406	0.90
Non-Cytoplasmic	407	416	0.79
Transmembrane Helix	417	437	0.92
Cytoplasmic	438	477	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFEPSEDKA RPGGLGVRHW QAVLLFVGMM INYFQRVNIS AAIVPMTQST AGAPFYTWDT  60
   61 SDKSLILSSF FWGYVVSQVP AGLLAKRFGA KLVLGLATAI GGILCFFHPI AAKSGWQSIC 120
  121 VLRVLTGLVQ GTVYPCVHTL LAKWVPRTER GLLTTGVYSG AQFGTAVILV TSGFIFESSM 180
  181 GWPGLFYLSG GLSLAWALLF FWQAANEPVT ASRISKGEVE YIESLTGSNS SSQSMPVPWM 240
  241 SIFRSPAFYG LLAAHCGFTW GFYTLLTEMP TYMSMVLQLN VKSNAFLSSL PYFAMGLLCF 300
  301 VVSPISDLLI NRGTISITTA RKLFNSIGQW GPMACLIGLG YMTADEKTWA ILLLTLAVGI 360
  361 NAGCSCGYLI NHIDLSPNFA GPMMGVTNGI AGVTSIIAPL VVGAIVSDEE DPSQWRMVFF 420
  421 ITGGIYLVCN TIFVIFGKAT IQIWNEPPST SSTMTLRSHQ ENDSKSIVPT SDKDIRY