YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or43b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGHFKLVYP APISEPIQSR DSNAYMMETL RNSGLNLKND FGIGRKIWRV FSFTYNMVIL  60
   61 PVSFPINYVI HLAEFPPELL LQSLQLCLNT WCFALKFFTL IVYTHRLELA NKHFDELDKY 120
  121 CVKPAEKRKV RDMVATITRL YLTFVVVYVL YATSTLLDGL LHHRVPYNTY YPFINWRVDR 180
  181 TQMYIQSFLE YFTVGYAIYV ATATDSYPVI YVAALRTHIL LLKDRIIYLG DPSNEGSSDP 240
  241 SYMFKSLVDC IKAHRTMLNF CDAIQPIISG TIFAQFIICG SILGIIMINM VLFADQSTRF 300
  301 GIVIYVMAVL LQTFPLCFYC NAIVDDCKEL AHALFHSAWW VQDKRYQRTV IQFLQKLQQP 360
  361 MTFTAMNIFN INLATNINVA KFAFTVYAIA SGMNLDQKLS IKE

Type	Start	End	Confidence
Cytoplasmic	1	50	0.97
Transmembrane Helix	51	72	0.88
Non-Cytoplasmic	73	80	0.83
Transmembrane Helix	81	103	0.84
Cytoplasmic	104	136	0.95
Transmembrane Helix	137	157	0.88
Non-Cytoplasmic	158	192	0.89
Transmembrane Helix	193	215	0.79
Cytoplasmic	216	271	0.85
Transmembrane Helix	272	293	0.89
Non-Cytoplasmic	294	300	0.78
Transmembrane Helix	301	323	0.84
Cytoplasmic	324	403	0.78