YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG1942-PA
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIEWAPLRV PLERRLQILV TAFFTSMLLI LLSVSFLLVA GSLIYGGLLV RSLMVTYLAY  60
   61 VFVHHKKTQS VVDGNGWMIT RTNLLHRHYR DYFPVELVKT AELPATKNYI LASFPHGILG 120
  121 TGIGINMGLE ISKWLELFPQ VRPKLGTLDQ HFHVPFMREV LRCWGLVSVS KEALIRMLSK 180
  181 SNDPKHKDNR DGFTSNAVAI LVGGAQEAMD SHPGQYILTL KNRKGFVRMA IRTGSSIVPS 240
  241 FSFGEVDIFD QVANPPNSLL RRFQDFVKKL TGVSPLIPVG RGFFNYTFGF LPFRRRIVQV 300
  301 VGAPIDVVKN EHPDSEYVDK VHGQVIESLE KLFDQYKDKY LENSKSATLV VH

Type	Start	End	Confidence
Cytoplasmic	1	17	0.91
Transmembrane Helix	18	40	0.87
Non-Cytoplasmic	41	42	0.51
Transmembrane Helix	43	63	0.54
Cytoplasmic	64	111	0.51
Transmembrane Helix	112	129	0.46
Non-Cytoplasmic	130	352	0.56