YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr43b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGSHSPEA MWSATNFRRH QRKPNQVLHR WFFKGSAWII YAIACGLHFF KLHYNERTNQ  60
   61 VEESQYHRIW SKIVVVLKVI LLASPYLQYF VLGLGIYIHI TLVQDSKAQN FLMSLIVLGI 120
  121 VIGVLRRLLI FLHLKRDRRF LKHTVNEILH ITSALEQKFG MEYKCDSTLL VVYLAKLWIL 180
  181 TVMLDSLWYK PYFLSSIFLY WVLLEYCFAG YFIYQLILLS WYHTIILFLQ RFIEDHANRL 240
  241 DIELHYHRRL IPLFELHLRI NNLHKHVRDN VSWLSTSVYL MIFTCIFNAE LLIECSLFAG 300
  301 DELENKIYII TDGCLGPVCV PILYVLILGM CTDRFRDAEV QLQQLFVIVQ GLYMRKVRPH 360
  361 LLIAMVLENE HTSLIIHQKL KPLENMIILD ITCDREFVMD YIVTVILTAL SLVQYTISTG 420
  421 GNISECVTHK

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.76
Transmembrane Helix	35	54	0.75
Cytoplasmic	55	73	0.89
Transmembrane Helix	74	98	0.82
Non-Cytoplasmic	99	110	0.80
Transmembrane Helix	111	130	0.97
Cytoplasmic	131	168	0.94
Transmembrane Helix	169	189	0.76
Non-Cytoplasmic	190	196	0.74
Transmembrane Helix	197	222	0.75
Cytoplasmic	223	272	0.85
Transmembrane Helix	273	293	0.80
Non-Cytoplasmic	294	307	0.71
Transmembrane Helix	308	328	0.85
Cytoplasmic	329	430	0.79