YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or43a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIEDIGLVG INVRMWRHLA VLYPTPGSSW RKFAFVLPVT AMNLMQFVYL LRMWGDLPAF  60
   61 ILNMFFFSAI FNALMRTWLV IIKRRQFEEF LGQLATLFHS ILDSTDEWGR GILRRAEREA 120
  121 RNLAILNLSA SFLDIVGALV SPLFREERAH PFGLALPGVS MTSSPVYEVI YLAQLPTPLL 180
  181 LSMMYMPFVS LFAGLAIFGK AMLQILVHRL GQIGGEEQSE EERFQRLASC IAYHTQVMRY 240
  241 VWQLNKLVAN IVAVEAIIFG SIICSLLFCL NIITSPTQVI SIVMYILTML YVLFTYYNRA 300
  301 NEICLENNRV AEAVYNVPWY EAGTRFRKTL LIFLMQTQHP MEIRVGNVYP MTLAMFQSLL 360
  361 NASYSYFTML RGVTGK

Type	Start	End	Confidence
Cytoplasmic	1	32	0.89
Transmembrane Helix	33	51	0.88
Non-Cytoplasmic	52	58	0.77
Transmembrane Helix	59	80	0.91
Cytoplasmic	81	122	0.97
Transmembrane Helix	123	144	0.84
Non-Cytoplasmic	145	178	0.71
Transmembrane Helix	179	203	0.82
Cytoplasmic	204	246	0.77
Transmembrane Helix	247	270	0.89
Non-Cytoplasmic	271	276	0.56
Transmembrane Helix	277	297	0.85
Cytoplasmic	298	376	0.61