YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG9430-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDQHLIVAK IVAIVVLFLV TLIFCFIPYL LDRFYKWTQR PENNAREFKV VLCLLNFGGG  60
   61 VLIATTFIHM LPEVVEVVNA LQDCRMLAPT PFGLPEVLLC TGFYLMYCIE ETMHFVVRRR 120
  121 QQRKLREVVT IKDAGEELRT EIVVQPEESP KEPNWLRGLG IIVALSLHEL FGGMAIGLEM 180
  181 SVSTVWFMTG AISVHKLVLA FCIGMEIMMA HTRWLLAVVY LLVFSIVTPI GVGIGIAVSE 240
  241 SAAANQPSTV SGILQGLACG TLIYVVFFEI VAKNHAGIRI LLSSMVGFVL MFGLQIASKH 300
  301 TKKPK

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.95
Transmembrane Helix	7	31	0.91
Cytoplasmic	32	49	0.94
Transmembrane Helix	50	71	0.93
Non-Cytoplasmic	72	91	0.91
Transmembrane Helix	92	116	0.78
Cytoplasmic	117	154	0.97
Transmembrane Helix	155	178	0.82
Non-Cytoplasmic	179	184	0.74
Transmembrane Helix	185	205	0.84
Cytoplasmic	206	215	0.66
Transmembrane Helix	216	238	0.92
Non-Cytoplasmic	239	248	0.74
Transmembrane Helix	249	268	0.86
Cytoplasmic	269	276	0.63
Transmembrane Helix	277	297	0.91
Non-Cytoplasmic	298	305	0.70