YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZIP1-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATATMSQE QTQDVDHHAL LVAKIVSMVV LVVITVLCGS LPYVLNRCFH WTKASPEETR  60
   61 SSLVVRCLLF FGGGVLICTT FLHMLPEVIE VVEALQECGS LVKTPFALAE MLLCTGFFLM 120
  121 YALDELMTSL VRHHQGKLSR KESVASLAFE RGRSIRHSVL LNPQAKEEVE VKDTEPQPHK 180
  181 DHHGHSHMPV PADDGSSARG LGIILALSLH ELFEGMAIGL EGTVSTVWFM FGAVSAHKLV 240
  241 LAFCVGMELL VARTRSSLAI LYLVTFSIVT PIGIGVGLGI SQQVAAGQPS LPSGVLQGIA 300
  301 CGTLLYVVFF EILIESHAGW RALVAAVAGF ALMFGLQILS DEAEGDDSLT CS

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.94
Transmembrane Helix	21	45	0.89
Cytoplasmic	46	62	0.92
Transmembrane Helix	63	85	0.93
Non-Cytoplasmic	86	105	0.86
Transmembrane Helix	106	123	0.93
Cytoplasmic	124	197	0.92
Transmembrane Helix	198	218	0.79
Non-Cytoplasmic	219	226	0.70
Transmembrane Helix	227	251	0.80
Cytoplasmic	252	257	0.90
Transmembrane Helix	258	280	0.92
Non-Cytoplasmic	281	290	0.76
Transmembrane Helix	291	310	0.92
Cytoplasmic	311	318	0.76
Transmembrane Helix	319	339	0.92
Non-Cytoplasmic	340	352	0.93