YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Vha16-PD, Vha16-...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEVSSDNP IYGPFFGVMG AASAIIFSAL GAAYGTAKSG TGIAAMSVMR PELIMKSIIP  60
   61 VVMAGIIAIY GLVVAVLIAG ALEEPSKYSL YRGFIHLGAG LAVGFSGLAA GFAIGIVGDA 120
  121 GVRGTAQQPR LFVGMILILI FAEVLGLYGL IVAIYLYTK

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.69
Transmembrane Helix	15	37	0.91
Cytoplasmic	38	57	0.67
Transmembrane Helix	58	81	0.92
Non-Cytoplasmic	82	93	0.70
Transmembrane Helix	94	118	0.87
Cytoplasmic	119	130	0.65
Transmembrane Helix	131	156	0.87
Non-Cytoplasmic	157	159	0.65