YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0311514, CG1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.97
Transmembrane Helix	53	73	0.91
Non-Cytoplasmic	74	93	0.85
Transmembrane Helix	94	115	0.89
Cytoplasmic	116	122	0.81
Transmembrane Helix	123	142	0.95
Non-Cytoplasmic	143	149	0.72
Transmembrane Helix	150	171	0.93
Cytoplasmic	172	180	0.79
Transmembrane Helix	181	201	0.94
Non-Cytoplasmic	202	208	0.81
Transmembrane Helix	209	231	0.92
Cytoplasmic	232	456	0.98
Transmembrane Helix	457	478	0.74
Non-Cytoplasmic	479	490	0.68
Transmembrane Helix	491	510	0.77
Cytoplasmic	511	521	0.83
Transmembrane Helix	522	543	0.93
Non-Cytoplasmic	544	549	0.73
Transmembrane Helix	550	571	0.92
Cytoplasmic	572	578	0.81
Transmembrane Helix	579	601	0.80
Non-Cytoplasmic	602	613	0.80
Transmembrane Helix	614	632	0.96
Cytoplasmic	633	658	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHKEKIINSQ NASKINQKDH KPNGNTNESR HKTVSLINKK DDKEYDLVPP DGGWGWLVLL  60
   61 GSCLTNILIP GTIKSFGVLF SEFTDAFNSS PTKAAWIPAL CYFLYSSLGP VSSILSVKYS 120
  121 YRTVTLLGGA SASLGMILSF WASSIEFLYI SYGVLVGIGA GLSFPPTVYI VTSYFAKLRG 180
  181 LANGLCISGS ALGSIILPPL LRWLLETYGY HGSCLIMGGI TLNVFVAALF YEPVEQHMVR 240
  241 VPRARQALEN IPEEEDIGIV MKFENVDEPV PKNEPADKPL LPYNSPPSPL YLPGDERLQF 300
  301 VRSASAAVVQ SYSKSGDEFQ SRSRKISTPV RLPQRNQTFT PGQLNSQSSL YAVPEGRSSS 360
  361 NKLTLRNSSK SRLSKRSPST SSFLYVSTPY HGSTLSFQPK EFSSHLSLRS MGSSGTGHAG 420
  421 DSTGQDGSYA DVDARGQAQQ PQRSKFFDLS LLKDPMYLVI LISNSTNAIS YTNFIILLPS 480
  481 FGEARGFNKS LSAYLLSVVS ATDLIGRIGG SALSDMGYIP KTWYFVGGLS ISGLSLALLP 540
  541 FAWTYSSVCF WCALFGLASG IYVGITAVIM ADMLGTERLT SSYGISLFVN GLLQLVGPPL 600
  601 CNYWFEAVND YNPLFHALGL TLLAGASLWS FMPWINRRKA NAEEQLDAQI EKAAVDSY