YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr39b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYSFHPYLK YFALLGLVPW SESCAQSKFV QKVYSAILII LNAVHFGISI YFPQSAELFL  60
   61 SLMVNVIVFV ARIVCVTVII LQVMVHYDDY FRFCREMKYL GLRLQCELKI HVGRLKWQSY 120
  121 AKILALGIGF LVTVLPSIYV ALSGSLLYFW SSLLSILIIR MQFVLVLLNV ELLGHHVSLL 180
  181 GIRLQNVLEC HLMGANCTLD GNANRLCSLE FLLALKQSHM QLHYLFTHFN DLFGWSILGT 240
  241 YVVLFSDSTV NIYWTQQVLV EVYEYKYLYA TFSVFVPSFF NILVFCRCGE FCQRQSVLIG 300
  301 SYLRNLSCHP SIGRETSYKD LLMEFILQVE QNVLAINAEG FMSTDNSLLM SILAAKVTYL 360
  361 IVLMQFSSV

Type	Start	End	Confidence
Cytoplasmic	1	32	0.77
Transmembrane Helix	33	52	0.91
Non-Cytoplasmic	53	61	0.74
Transmembrane Helix	62	85	0.85
Cytoplasmic	86	119	0.94
Transmembrane Helix	120	142	0.88
Non-Cytoplasmic	143	148	0.68
Transmembrane Helix	149	173	0.78
Cytoplasmic	174	223	0.94
Transmembrane Helix	224	245	0.84
Non-Cytoplasmic	246	266	0.83
Transmembrane Helix	267	286	0.88
Cytoplasmic	287	369	0.80