YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr39a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVCRDLRI YLRLLHIMGM MCWHFDSDHC QLVATSGSER YAVVYAGCIL VSTTAGFIFA  60
   61 LLHPSRFHIA IYNQTGNFYE AVIFRSTCVV LFLVYVILYA WRHRYRDLVQ HILRLNRRCA 120
  121 SSCTNQQFLH NIILYGMLTI LCFGNYLHGY TRAGLATLPL ALCMLVYIFA FLVLCLLLMF 180
  181 FVSLKQVMTA GLIHYNQQLC QGDLISGLRG RQQILKLCGG ELNECFGLLM LPIVALVLLM 240
  241 APSGPFFLIS TVLEGKFRPD ECLIMLLTSS TWDTPWMIML VLMLRTNGIS EEANKTAKML 300
  301 TKVPRTGTGL DRMIEKFLLK NLRQKPILTA YGFFALDKST LFKLFTAIFT YMVILVQFKE 360
  361 MENSTKSINK F

Type	Start	End	Confidence
Cytoplasmic	1	40	0.65
Transmembrane Helix	41	63	0.92
Non-Cytoplasmic	64	80	0.55
Transmembrane Helix	81	101	0.94
Cytoplasmic	102	126	0.54
Transmembrane Helix	127	149	0.84
Non-Cytoplasmic	150	157	0.47
Transmembrane Helix	158	182	0.89
Cytoplasmic	183	224	0.54
Transmembrane Helix	225	249	0.82
Non-Cytoplasmic	250	339	0.46
Transmembrane Helix	340	358	0.59
Cytoplasmic	359	371	0.62